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Data released on June 16, 2017

Supporting data for "16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model"

Luo, R; Schatz, M, C; Salzberg, S, L (2017): Supporting data for "16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model" GigaScience Database. http://dx.doi.org/10.5524/100316 RIS BibTeX Text

16GT is a variant caller for Illumina whole-genome and whole-exome sequencing data. It uses a new 16-genotype probabilistic model to unify SNP and indel calling in a single variant calling algorithm. In benchmark comparisons with five other widely used variant callers on a modern 36-core server, 16GT demonstrated improved sensitivity in calling SNPs, and it provided comparable sensitivity and accuracy for calling indels as compared to the GATK HaplotypeCaller. 16GT is available at https://github.com/aquaskyline/16GT.

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Additional information:

https://github.com/aquaskyline/16GT

Software

http://gigadb.org/images/data/cropped/100316.jpg

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
AlignmentsBAM108.16 GB2017-06-13
ReadmeTEXT1.51 KB2017-06-13
AlignmentsUNKNOWN23.37 MB2017-06-13
Sequence variantsVCF2.11 GB2017-06-13
Sequence variantsVCF312.09 MB2017-06-13
Sequence variantsVCF1.13 GB2017-06-13
Sequence variantsVCF266.08 MB2017-06-13
Sequence variantsVCF481.16 MB2017-06-13
Sequence variantsVCF1.26 GB2017-06-13
Sequence variantsVCF1.83 GB2017-06-13
Displaying 1-10 of 12 File(s).

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